GgaEX6012100 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2263742-2264983:+
Coord C1 exon
chr14:2263742-2263837
Coord A exon
chr14:2263970-2264154
Coord C2 exon
chr14:2264842-2264983
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTTGTTCCTTCCAGAAA
3' ss Score
10.08
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CATCCATACTTGACCTGGTCATGCCGTGCACAGAGACCACGGCCACCACGCTGCAGTGGGCCATCCTGCTGATGATGAAATACCCAGAGATCCAAA
Seq A exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
Seq C2 exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.4=100)
A:
PF0006717=p450=FE(14.1=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTTGACCTGGTCATGCC
R:
CTGTGGAGAAGGGCAGGAAAG
Band lengths:
235-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]