RnoEX6063665 @ rn6
Exon Skipping
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17383437-17384167:-
Coord C1 exon
chr12:17384029-17384167
Coord A exon
chr12:17383765-17383949
Coord C2 exon
chr12:17383437-17383578
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGTGCCACCTTCTGGCCTAGGTC
3' ss Score
6.99
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CAGGATGACCCGGAGGACATGTTTAGCGAGGCTAATGTTCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACTACGGCAGCCACACTGCAGTGGGCAGTCTTCCTGATGGTTAAGCACCCACACGTGCAGG
Seq A exon
GTCGTGTGCAGGAGGAGCTGGACCGAGTGCTGGGCCCTGGGCAGCTACCTCAACCAGAGGACCAGCGAGCACTGCCCTATACCAGTGCTGTGCTGCACGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACGGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCTAAG
Seq C2 exon
GGCACCCCCGTGATTCCTTTGCTGACCTCAGTGCTCCTGGACAAGACGCAGTGGGAGACTCCAAGCCAGTTCAACCCAAACCACTTTCTGGATGCCAAGGGATGCTTTATGAAGCGGGGAGCGTTCCTGCCTTTCTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.290 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACATGTTTAGCGAGGC
R:
GAACGCTCCCCGCTTCATAAA
Band lengths:
254-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]