BtaEX0010600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306656-42307409:-
Coord C1 exon
chr25:42307271-42307409
Coord A exon
chr25:42306963-42307147
Coord C2 exon
chr25:42306656-42306797
Length
185 bp
Sequences
Splice sites
3' ss Seq
GCCGTCTGTCTCGCCCGCAGGCC
3' ss Score
12.55
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
GAGAAAGACCCCGAGGGCCTGTTTACCGAGGCCAACGTGGTGGCCTGTGTCCTGGACATGGTCATGGCCGGCACGGAGACCACCGCCGCCACACTGCAGTGGGCCGCCCTCCTGATGGGCAAGCACCCGCGCGTGCAGA
Seq A exon
GCCGTGTGCAGGAGGAGCTGGACCGCGTGCTGGGGCCCGCGCGGCTCCCGCGGCCAGAGGACGTGCACGCCCTGCCCTATACTAACGCCGTGCTGCACGAAGTGCAGCGCTTCATCACGCTGCTGCCCCACGCGCCGCGGTGCACGGTCGCCAACACCCAGCTGGGCCCCTACCTGCTCCCCAAG
Seq C2 exon
GGCACACCCGTGCTGGCCCTACTGAACTCCGTGCTCCTGGACGAGACGCAGTGGAAGACGCCCCGCCAGTTCAACCCGGGCCACTTCCTGGACGCCAACGGGCGCTTCGTCAAGCGGCCGGCTTTCCTGCCTTTCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCGAGGCCAACGTGGT
R:
TGCGGAGAAAGGCAGGAAAG
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development