MmuEX6022056 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139356050-139356747:+
Coord C1 exon
chr5:139356050-139356188
Coord A exon
chr5:139356268-139356452
Coord C2 exon
chr5:139356606-139356747
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGTGCTACCCTCTGGCCTAGGTC
3' ss Score
6.56
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GAAGATGACCCTGAGGACATGTTTGGCGAGGCCAATGTCCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACCACGGCGGCCACGCTGCAGTGGGCCGTCTTCCTGATGGTTAAGCACCCACATGTGCAGG
Seq A exon
GTCGCGTGCAGGAGGAACTGGACCGAGTGCTGGGTCCTGGGCAGCTGCCTCAACCAGAGCACCAGCGAGCACTGCCCTACACCAGTGCTGTGTTGCATGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACAGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCCAAG
Seq C2 exon
GGCACTCCTGTGATTCCTTTGCTCACTTCAGTCCTCCTGGACAAGACGCAGTGGGAGACCCCAAGCCAGTTCAACCCAAACCACTTTCTGGACGCGAAGGGGCGCTTTATGAAGCGGGGGGCCTTCCTGCCATTCTCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-'10-13,'10-10,11-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTCCTGGCCTGTACAC
R:
CAGCGGAGAATGGCAGGAAG
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types