HsaEX1000862 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:40817762-40825261:-
Coord C1 exon
chr19:40825120-40825261
Coord A exon
chr19:40822212-40822399
Coord C2 exon
chr19:40817762-40818899
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCCCTTCCCCTCCAGCCC
3' ss Score
10.5
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
AAGAAGGAGGACCCGCTGAGCCACTTCCACATGGATACCCTGCTGATGACCACACATAACCTGCTCTTTGGCGGCACCGAGACGGTGGGCACCACGCTGCGCCACGCCTTCCTGGCATTCATGAAGTACCCGAAAGTTCAAG
Seq A exon
CCCACGTGCAGGAGGAGATCAACCTTGTGGTGGGACACGTGCGGCTGCCAGCGCTGAAGGACCGCGCGGCCATGCCTTACACAGACATGGTGATCCACGAGGTGCAGCGCTTTGCAGACATCATCCCCATGAACTTGCCGCACCGCATCACTAGGGACACGGCCTTTCACGGCTTCCTGATACCCAAG
Seq C2 exon
GGCACCGTCTGTGCCTGGGAGAGTCGCTGGCGCGCATGGAGCTCTTTCTGTACCTCACCGCCATCCTGCAGAGCTTTTCGCTGCAGCCGCTGGGTGCGCCCGAGGACATCGACCTGACCCCGCTCAGCTCAGGTCTTGGCAATTTGCCGCGGCCTTTCCAGCTGTGCCTGCACCCGCGCTAACGCCCCGGCCCTTCCAGATTCGCCTGTGAGCGATGAGGCCCACCCATGTGGGTTGCTACGTCCCCTTCTTGGTCCACGGTCTGCCTCCATCCCTCTGGCAGTCACGCTGTCTTCCCTGCATGCTGTGCCTGCCGCGTGCCCTTCCCCCATCCCTCCAATCTGTACCCCGTCTGCAGGGCAGAGGCAGATGTGGCATGTCTTTTTGTACCCACAGAGCTTGTTCTATGGCACGCCCTTTTCTGGGCTTTTTGTATCATTTCTTAGTACATTGTAATAGATTCAAACCAGTCTTGGCTGAATTAAAGTGAGAATGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
Hs.676472_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTGCTGATGACCACACA
R:
GCAAATTGCCAAGACCTGAGC
Band lengths:
254-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains