DreEX6015444 @ danRer10
Exon Skipping
Gene
ENSDARG00000101190 | cyp2k8
Description
cytochrome P450, family 2, subfamily K, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-080721-19]
Coordinates
chr3:12643555-12647349:+
Coord C1 exon
chr3:12643555-12643696
Coord A exon
chr3:12643834-12644018
Coord C2 exon
chr3:12647208-12647349
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGTGATCTTGTTGGCCATAGATC
3' ss Score
8.84
5' ss Seq
AAGGTTGTG
5' ss Score
-0.49
Exon sequences
Seq C1 exon
GAAACTGGAGAAAAAGATTCATCTTTCAATGATCAGAATCTGCTCATTACTGTGTCAAATTTGTTTGCTGCTGGCACTGACACGACTGGCACGACGCTGCGCTGGGGTCTGATGCTCATGGCCAAATACCCTCAAATACAAG
Seq A exon
ATCGAGTTCAGGAGGAGATTGACCAGGTTCTGGGTGGCCGTGAACCAGTTGCAGAAGACAGAAAGAACTTACCGTATACAGATGCTGTGATTCATGAAACACAGAGACTGGCTAATATTCTACCACTGAATCTCCCTCATAAGACGAGCTGTGATGTTACCTTCAATGGATATTTCATCAAGAAG
Seq C2 exon
GGGACGTGTGTTCTGCCGCTGCTGACCTCTGTGTTGAGGGATGAGACCGAGTGGGAGACGCCTGACACTTTCAACCCTCAGCACTTTCTAGATGAGAAGGGTCAGCTGATCAAACGAGACGCCTTCATGCCTTTTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101190-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.129 C2=0.062
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.3=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATCTGCTCATTACTGTGTCA
R:
TGCAGAAAAAGGCATGAAGGC
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]