GgaEX6012094 @ galGal3
Exon Skipping
Gene
ENSGALG00000003917 | F1P2F9_CHICK
Description
NA
Coordinates
chr14:2252572-2254093:+
Coord C1 exon
chr14:2252572-2252713
Coord A exon
chr14:2253279-2253466
Coord C2 exon
chr14:2253952-2254093
Length
188 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTCCTCCCCACAAGGAA
3' ss Score
6.27
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGTCAAAGAAACCCCACAGTATGTTCCACAATGAAAGCCTGCTGTTTTCAACCCTGGATCTCTTTGCTGCTGGGACTGAGACTACTTCCACAACCATGCGCTGGGGTCTCCTTCTGATGATGAAATACCCAGAAATTCAGA
Seq A exon
GAAAAATTCAGGAAGAAATGAACCAGGTCATCGAGCCAGGGGAGATGCCGAGGCTGGAGGACCGGAAAAAGATGCCTTACACAGATGCAGTGATACACGAAATACAAAGATTTGCCAATATTGTCCCAATGGGTGTGTCACGATCAACACCTACTGATGTGAATTTCCGAGGCTACGTAATTCCTAAG
Seq C2 exon
GGTACAGAGATTATACCGCTGCTGACCTCTGCTCTGAATGACGAGCTGCACTGGAAAACCCCACATCAGTTCAACCCATCCCACTTCCTGGACGCTGATGGGAACTTTGTTAGGAGAGAGGCATTTATTCCATTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.254 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCACAGTATGTTCCACA
R:
ACAAAGTTCCCATCAGCGTCC
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]