BtaEX6083025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53765921-53766679:-
Coord C1 exon
chr18:53766584-53766679
Coord A exon
chr18:53766142-53766290
Coord C2 exon
chr18:53765921-53766014
Length
149 bp
Sequences
Splice sites
3' ss Seq
CATAACACGCCCCCTCCCAGTAC
3' ss Score
3.06
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGTCTTGCTTCCGCGAAGAGAGGGACGTATTGGTGAACGGGGACCAGCGCTGGATCACGCAGCTGCACTTCGCCTTCCAGGACGAGAACTACCTG
Seq A exon
TACCTTGTCATGGAGTACTACGTGGGCGGGGACCTGCTAACGCTGCTGAGCAAGTTTGGGGAGCGGATACCGGCCGAGATGGCGCGCTTCTACCTGGCCGAGATTGTCATGGCCATAGACTCGGTGCACCGGCTGGGCTACGTGCACAG
Seq C2 exon
GGACATTAAGCCGGACAACATCCTGCTGGACCGCTGCGGCCACATCCGCTTGGCCGACTTCGGCTCCTGCCTCAAGTTGCGGGCGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.5=100)
A:
PF0006920=Pkinase=FE(18.2=100)
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGCTTCCGCGAAGAGAG
R:
TTCCATCCGCCCGCAACTT
Band lengths:
186-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]