GgaEX6039099 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52456678-52464519:-
Coord C1 exon
chr5:52464424-52464519
Coord A exon
chr5:52460148-52460296
Coord C2 exon
chr5:52456678-52456771
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTCTCCCTTTTCAGTAT
3' ss Score
10.24
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACAGCTTGTTTCCGAGAAGAGAGAAATGTCTTGGTGAATGGAGATTGCCAGTGGATTACTACATTGCACTATGCCTTTCAAGATGAGAACTATTTG
Seq A exon
TATCTAGTGATGGACTACTATGTTGGTGGTGACTTGCTGACGCTTCTCAGTAAGTTTGAAGACAAACTTCCTGAAGACATGGCAAGGTTCTACATTGGTGAAATGGTGCTTGCAATACATTCCATACATGAGCTGCATTATGTGCACAG
Seq C2 exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTTGTTTCCGAGAAGAGA
R:
TGCCATCTTCACTCATTTTCAGACA
Band lengths:
188-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]