RnoEX0018989 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135780383-135790540:-
Coord C1 exon
chr6:135790445-135790540
Coord A exon
chr6:135786660-135786808
Coord C2 exon
chr6:135780383-135780476
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTTCTGATTTGTAGTAC
3' ss Score
6.32
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACAGCTTGCTTTCGAGAAGAGAGGGATGTGCTGGTGAACGGTGACTGCCAGTGGATCACTGCGCTACACTACGCCTTTCAAGATGAGAACTACCTG
Seq A exon
TACTTGGTTATGGATTACTATGTGGGTGGTGACTTGCTGACCCTGCTGAGTAAGTTTGAAGACAAACTTCCAGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGCCATCGACTCGATCCACCAGCTCCACTATGTGCACAG
Seq C2 exon
AGACATTAAACCCGACAACGTCCTTCTGGATGTCAACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGACGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'10-10,'10-6,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCTTTCGAGAAGAGAGGG
R:
AGTGCCGTCATCGTTCATCTT
Band lengths:
187-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]