HsaEX6073020 @ hg19
Exon Skipping
Gene
ENSG00000198752 | AL117209.2
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:1738]
Coordinates
chr14:103452824-103470360:-
Coord C1 exon
chr14:103470265-103470360
Coord A exon
chr14:103465902-103466050
Coord C2 exon
chr14:103452824-103452917
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCCAATTTGTAGTAC
3' ss Score
6.44
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACCGCGTGCTTCCGAGAGGAGCGCGATGTGCTGGTGAACGGCGACTGCCAGTGGATCACCGCGCTGCACTACGCCTTTCAGGACGAGAACCACCTG
Seq A exon
TACTTAGTCATGGATTACTATGTGGGTGGTGATTTACTGACCCTGCTCAGCAAATTTGAAGACAAGCTTCCGGAAGATATGGCGAGGTTCTACATTGGTGAAATGGTGCTGGCCATTGACTCCATCCATCAGCTTCATTACGTGCACAG
Seq C2 exon
AGACATTAAACCTGACAATGTCCTTTTGGACGTGAATGGTCATATCCGCCTGGCTGACTTTGGATCATGTTTGAAGATGAATGATGATGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCGTGCTTCCGAGAG
R:
AGTGCCATCATCATTCATCTTCA
Band lengths:
190-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)