DreEX0020192 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18566294-18575132:-
Coord C1 exon
chr20:18575037-18575132
Coord A exon
chr20:18573341-18573489
Coord C2 exon
chr20:18566294-18566387
Length
149 bp
Sequences
Splice sites
3' ss Seq
GATAATGTCTCCTCCTGCAGTAC
3' ss Score
7.24
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ACGGCATGCTTTCGGGAAGAGAGGAACGTCCTGGTGAATGGAGACTGCCAGTGGATCACTACCCTTCATTATGCTTTTCAGGATGACAACTATCTG
Seq A exon
TACTTGGTGATGGATTATTACGTTGGCGGTGACCTGCTGACGCTGCTTAGTAAATTTGAAGACCGGCTGCCGGAGGACATGGCCAAGTTCTACGTGGCGGAGATGGTTCTCGCCATCCACTCCATCCATCAGCAGCGCTACGTACACAG
Seq C2 exon
GGATATAAAACCCGACAACGTGCTGCTGGACATGAACGGCCACATCCGACTCGCTGACTTCGGCTCCTGTCTGAAGATGATGCAAGACGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(18.4=100)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTTTCGGGAAGAGAGG
R:
CGTGCCGTCTTGCATCATCTT
Band lengths:
187-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]