BtaEX6078824 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69317174-69325407:-
Coord C1 exon
chr21:69325312-69325407
Coord A exon
chr21:69322810-69322958
Coord C2 exon
chr21:69317174-69317273
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTGCCTATTTGCAGTAC
3' ss Score
7.55
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACGGCCTGTTTCCGGGAAGAGCGAGACGTGCTGGTGAACGGGGACTGTCAGTGGATCACCACGCTGCACTACGCCTTCCAGGACGAGAACTACCTG
Seq A exon
TACTTGGTCATGGATTACTACGTGGGTGGCGATTTACTGACCCTGCTCAGTAAATTTGAAGACAAGCTTCCAGAAGATATGGCAAGATTCTACATCGGTGAAATGGTGTTGGCGATCGATTCCATCCATCAGCTTCATTACGTACACAG
Seq C2 exon
TAACAGAGACATTAAACCTGACAATGTCCTTCTGGATGTAAATGGTCATATCCGCCTGGCCGACTTTGGATCCTGTTTGAAGATGAATGACGATGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-'4-4,'4-3,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.5=100)
A:
PF0006920=Pkinase=FE(18.2=100)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGTTTCCGGGAAGAG
R:
AGTTCCATCGTCATTCATCTTCA
Band lengths:
194-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]