BtaEX6083539 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56416593-56420319:+
Coord C1 exon
chr18:56416593-56416841
Coord A exon
chr18:56416948-56417223
Coord C2 exon
chr18:56420050-56420319
Length
276 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTGTGGGCACCCCAGGCC
3' ss Score
4.55
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAACTATCGCTCGCTCCAGTACCACTTCACCGCCGTGTCGGCCCCCGCAGCGGGGACCCCTGCTTTCTGGGTTTCGGGCTGGCTGGGGCCCCAGCAGTACCTGAGCTACAATAATCTACGGGCGCAGGCTGAGCCCTACGGCGCGTGGGTCTGGGAAAGCCAGGTGTCCTGGTATTGGGAGAAAGAGACCATGGATCTGAGGAACCAGGAGACGCTCTTCCTCGAAGCGCTCCAAGCTTTAGGCGAAG
Seq A exon
GCCCCTTCACCATGCAGGGCCTGTTGGGCTGCGAGTTGGGCCCTGACAATGTCTCGGTGCCGGTGGCCAAGTTTGCCCTGAACGGCGAGGAGTTCATGATGTTTGACCCCAAGCTGGGCATCTGGGATGGTGACTGGCCTGAGTCCCGGACTGTCAGTATCAAGTGGACGCAGCAGCCAGAGGCGGTCAACAAGGAGAAGACCTTCCTCCTCTACTCCTGCCCACACCGGCTGCTGGGGCATCTGGAGAGGGGCCGGGGCAACCTGGAGTGGAAAG
Seq C2 exon
AGCCACCCTCCATGCGCCTGAAGGCCCGACCCGGCAGTCCCGGCTTCTCTGTGCTCACCTGCAGCGCCTTCTCCTTCTACCCACCTGAGCTGAAGCTGCGCTTTCTGCGGAACGGGCTGGCCATTGGCTCTGGTGAGATAGACATGGGCCCCAACGGCGACGGCTCCTTCTACGCCTGGTCATCACTCACAGTCAAGAGTGGCGACGAGCACCACTACCGCTGCGTGGTGCAGCACGCGGGGCTGGCCCAGCCCCTCACGGTGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926-'3-9,'3-6,4-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.055
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.0=97.6)
A:
PF0012913=MHC_I=PD(51.5=94.6)
C2:
PF0765410=C1-set=WD(100=86.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCCAGTACCACTTCAC
R:
CTGCAGGTGAGCACAGAGAAG
Band lengths:
303-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]