RnoEX0035535 @ rn6
Exon Skipping
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101088582-101094978:-
Coord C1 exon
chr1:101094721-101094978
Coord A exon
chr1:101094234-101094509
Coord C2 exon
chr1:101088582-101088851
Length
276 bp
Sequences
Splice sites
3' ss Seq
GCCTGCGTGTTGGCATCTAGGGA
3' ss Score
6.83
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATG
Seq A exon
GGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGG
Seq C2 exon
AGCCGCCATCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTACCCGCCGGAGCTCAAGTTTCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGCACTGGTCCCAATGGTGATGGATCTTTCCATGCATGGTCATTGCTAGAGGTCAAACGTGGAGATGAACACCATTACCAATGTCAAGTGGAGCATGAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.231
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.9=97.7)
A:
PF0012913=MHC_I=PD(50.6=94.6)
C2:
PF0765410=C1-set=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTACAACAACCTGCGG
R:
CTGCAATTCCCAGAGCCTGAG
Band lengths:
299-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]