MmuEX6010537 @ mm9
Exon Skipping
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:52350530-52358041:-
Coord C1 exon
chr7:52357784-52358041
Coord A exon
chr7:52357280-52357555
Coord C2 exon
chr7:52350530-52350799
Length
276 bp
Sequences
Splice sites
3' ss Seq
GCCTGCGTGTTGGCATCTAGGGA
3' ss Score
6.83
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGACCCGCCCCCCACTGATGTATCATCTCACGGCTGTGTCAAACCCATCTACGGGGCTTCCCTCTTTCTGGGCTACAGGCTGGTTGGGTCCTCAGCAGTATCTGACCTACAACAGCCTGCGGCAGGAAGCTGACCCCTGTGGGGCCTGGATGTGGGAAAATCAGGTGTCTTGGTATTGGGAGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTTGGAGGCCCTCAAGACCCTGGAGAAGATATTAAATG
Seq A exon
GGACCTACACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCTCGGATAATTCCTCAGTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTTATGAAATTCAACCCAAGAATCGGCAATTGGACTGGGGAGTGGCCTGAGACGGAAATCGTTGCTAATCTGTGGATGAAGCAGCCTGATGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAAACTCTTGTCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCGACGGAACCTGGAGTGGAAGG
Seq C2 exon
AGCCGCCGTCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCCGTGCTGACCTGTGCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTCCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCCGGGAATTGCAGCACTGGTCCCAATGGAGATGGCTCTTTCCACGCATGGTCATTGCTGGAGGTCAAACGTGGAGATGAGCACCATTATCAATGTCAAGTGGAGCATGAGGGGCTGGCACAGCCTCTCACTGTGGACCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-'6-6,'6-4,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.187
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(48.9=97.7)
A:
PF0012913=MHC_I=PD(50.6=94.6)
C2:
PF0765410=C1-set=WD(100=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAAGGAGACCACAGAC
R:
TGGTGCTCATCTCCACGTTTG
Band lengths:
296-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: