BtaEX6084922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13167856-13168947:-
Coord C1 exon
chr19:13168874-13168947
Coord A exon
chr19:13168121-13168242
Coord C2 exon
chr19:13167856-13167993
Length
122 bp
Sequences
Splice sites
3' ss Seq
GGGTTCCCCTGGCCCCCCAGGCC
3' ss Score
7.77
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTGTTTGACTGGCTGGTCTCGGTGATCAACAGCAGCATCTGTGCCGCCCCCGACTCCTGGACCACTTTCATAG
Seq A exon
GCCTGCTGGACGTGTACGGGTTTGAGTCGTTCCCCAACAACAGCCTGGAGCAGCTCTGCATCAACTACGCCAACGAGAAGCTGCAGCAGCACTTCGTGGCTCACTACCTCCGGGCCCAGCAG
Seq C2 exon
ACCCCGACTGCCCTCCACCCCCAGGAGGAGTATGCAATGGAGGGCCTGGCGTGGTCGTTTGTCAGCTACCAGGACAACCAGCCCTGCTTGGATCTCATCGAGGGGAGCCCCGTCAGCATCTGCTCCCTCATAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'20-28,'20-27,22-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGACTGGCTGGTCTCG
R:
TCGTTTATGAGGGAGCAGATGC
Band lengths:
210-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]