GgaEX6017720 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8133716-8135333:-
Coord C1 exon
chr19:8135260-8135333
Coord A exon
chr19:8135048-8135169
Coord C2 exon
chr19:8133716-8133829
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTATCTTATGATACTCCTAGGTT
3' ss Score
5.47
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTTTGAATGGCTTGTTTTGGTCATAAACGAAAGCATTTATGCAGATACATCATTGTGGACCAGCTTCATAG
Seq A exon
GTTTGCTGGATGTTTATGGTTTTGAAGCCTTCCCTGAAAACAACTTGGAACAGCTTTGTATTAATTATGCCAATGAGAAACTGCAGCAGCACTTTGTAGCACACTATCTGAAGGCTCAACAG
Seq C2 exon
GAAGAATATGCATCTGAAGGTTTACAGTGGTCTTTCATAAACTACCAGGACAACCAGAGCTGCCTTGACCTGATAGAGGGCAATCCTCTCAGCATTTTTTCTCTGCTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAATGGCTTGTTTTGGTCA
R:
AAAATGCTGAGAGGATTGCCC
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]