GgaEX6017720 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8087342-8088959:-
Coord C1 exon
chr19:8088886-8088959
Coord A exon
chr19:8088674-8088795
Coord C2 exon
chr19:8087342-8087455
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTATCTTATGATACTCCTAGGTT
3' ss Score
5.47
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTTTGAATGGCTTGTTTTGGTCATAAACGAAAGCATTTATGCAGATACATCATTGTGGACCAGCTTCATAG
Seq A exon
GTTTGCTGGATGTTTATGGTTTTGAAGCCTTCCCTGAAAACAACTTGGAACAGCTTTGTATTAATTATGCCAATGAGAAACTGCAGCAGCACTTTGTAGCACACTATCTGAAGGCTCAACAG
Seq C2 exon
GAAGAATATGCATCTGAAGGTTTACAGTGGTCTTTCATAAACTACCAGGACAACCAGAGCTGCCTTGACCTGATAGAGGGCAATCCTCTCAGCATTTTTTCTCTGCTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAATGGCTTGTTTTGGTCA
R:
AAAATGCTGAGAGGATTGCCC
Band lengths:
170-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]