BtaEX6084924 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13166068-13167649:-
Coord C1 exon
chr19:13167473-13167649
Coord A exon
chr19:13167009-13167161
Coord C2 exon
chr19:13166068-13166175
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTCCTTTCCCCATAGGAC
3' ss Score
12.73
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGTGCCGCCTTAATCGGCCAAGCAGCGCAGCCCAGCTCCAGACGCGCATCGAGAGCGCCCTGACCGGCCACCCCCGCCTGGGGCGCGACAGGCTGAGCCCGGAGCCCAGCTTCATTGTGCTGCATTACGCGGGGCCCGTGCGGTACCGCACCGCGGGCCTGGTGGAGAAGAACAAG
Seq A exon
GACCCCGTCCCCCCGGAGCTGACCAGCCTCCTGCAGCAGTCCCAGGACCCCCTGCTCAAGGTGCTCTTTCCTGCCGACCCCGAAGACAAGTCCCCTGAGGAGCCCTCCGGCCAGAACCGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq C2 exon
GCCTCCCTGGAGCAGCTCCTGCAGGTCCTACATGGCACCACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGCCCAGGCACAGATATTCCACCGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'24-32,'24-31,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.583 C2=0.028
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.9=100)
A:
PF0006316=Myosin_head=FE(8.5=100)
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGACGCGCATCGAGAG
R:
CGGTGGAATATCTGTGCCTGG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]