DreEX6009020 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3636599-3638243:-
Coord C1 exon
chr5:3638067-3638243
Coord A exon
chr5:3637394-3637534
Coord C2 exon
chr5:3636599-3636706
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCATGTGTTTGTCAGGAC
3' ss Score
7.98
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
Exon sequences
Seq C1 exon
GAGTGTCGACTGAACAGAGCATCGGATGCAAAGAAGTTTCGTGTGCGTCTGGAGAAGGAGCTGTCAGATAATGCCAACATCAGCTGGGACAAGTTCAGCAAAGAGCCCCATTTCACTGTGGCCCACTACGCTGGCAGAGTCAGCTACCAGATTGAGGGCATGATGGAGAAGAACAAG
Seq A exon
GACCCAGTTCCCCCTGAGCTCATCTGTCTTCTACAAAAGTCCCAAGATTCATTGCTGAACAGCCTCTTTGCGGATGGTGACCGTGAGAGCGAGGGGTCTCGGGGACACAGTAAAGTGGTCACTGTTGTGTCCAAATTTAAG
Seq C2 exon
AATTCACTGGAAAGCCTGATGAAGATTTTGCACAGCACCACTCCACACTACACACGCTGCATTAAACCAAACCCGGACTGCAGACCACTCACTTTCCAAAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.043 C2=0.017
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.0=100)
A:
PF0006316=Myosin_head=FE(10.3=100)
C2:
PF0006316=Myosin_head=PU(28.1=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGACTGAACAGAGCATCGG
R:
CGGGTTTGGTTTAATGCAGCG
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]