MmuEX6088396 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84714344-84715709:+
Coord C1 exon
chr11:84714344-84714520
Coord A exon
chr11:84714853-84715005
Coord C2 exon
chr11:84715602-84715709
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCCTTGCCCTTTCCGATAGGAC
3' ss Score
9.94
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAATGCCGCCTTAACCGGCCAAGCAGTGCAGCACAACTACAGACGCGCATCGAGAGCACGCTGGCAGGACGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTCGTGGTTGTGCATTTCGCGGGACCTGTACGGTACCACACAGCCGGCCTGGTGGAAAAGAACAAG
Seq A exon
GACCCTGTTCCCCCTGAGCTGACTGAGCTCCTGCAGCAATCCCAAGACCCCCTGCTCACGATGCTGTTTCCTGCCAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCCGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
Seq C2 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTACATAATACAACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCACAGACTTTCCTCCAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.569 C2=0.139
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.9=100)
A:
PF0006316=Myosin_head=FE(7.7=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCACAACTACAGACG
R:
TGGAGGAAAGTCTGTGGCTGA
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: