BtaEX6084928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13162239-13164283:-
Coord C1 exon
chr19:13164180-13164283
Coord A exon
chr19:13162466-13162581
Coord C2 exon
chr19:13162239-13162368
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGTCTCCATCCTCAGAGT
3' ss Score
9.64
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTCTCTCACCGGAACTTCATGGAGCGGTACCAGCTACTGAGAAGGCTCCGTCCTGCCATAACCCCCAGCCCCCACGGCCCGTGTCCAGATGGAGGGCGCTCAG
Seq A exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
Seq C2 exon
CTCGAGCTCCTGGAGCGTGGGCGTGCCCAGGTGCTGGAGCAGTGTGCCCGCCACATCCAGCGTGGCTGGAGGAGACACCGGTGCCGCACGCAGGCCAGGCGGAGGCGGGCAGCTGTGCTCATCCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'33-42,'33-40,36-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.9=69.4)
A:
PF0006316=Myosin_head=PD(4.9=87.2)
C2:
PF0061222=IQ=PU(42.9=20.5)
Main Skipping Isoform:
ENSBTAT00000064679fB4537
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCGGAACTTCATG
R:
CTGCCTGGATGAGCACAGC
Band lengths:
234-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]