DreEX6009024 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3630657-3634976:-
Coord C1 exon
chr5:3634906-3634976
Coord A exon
chr5:3632910-3633049
Coord C2 exon
chr5:3630657-3630786
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCTCTACTCTCACCCACAGGCC
3' ss Score
11.62
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GATCCCAAATGACAGCTTCTTCCAAAGATATGGGCTGATTGCAAACAACAGACTAGCAGCAAAGAAGAAAA
Seq A exon
GCCCTGAGATGGGATCAGTTGTAGAAGATGTGCTCAGTGTGGTCATCAAAAAACACTCCCCAAACTCCACCTTCAGTCCTGATGACAACAACAACATGGTTCATTGTGGGAGAACAAAAGTCTTCCTCACGCACTCCCTG
Seq C2 exon
TTGGAGATCCTGGAGGAGCACAGGAACAGAGTGCGCTCACAGAAAGCGTTCAGCATCCAGTGCTGTTGGCGAAGGCACCAACAACGCCAGCGTTTCCTCCGGACACAGGCAGCCACATGTATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'12-15,'12-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(18.0=100)
A:
PF0006316=Myosin_head=PD(33.6=91.5)
C2:
PF0061222=IQ=WD(100=45.5),PF0061222=IQ=PU(38.1=18.2)
Main Skipping Isoform:
ENSDART00000159368fB554
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAATGACAGCTTCTTCCA
R:
GCTTGTATACATGTGGCTGCCT
Band lengths:
197-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]