MmuEX6088392 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84905540-84907635:+
Coord C1 exon
chr11:84905540-84905643
Coord A exon
chr11:84907236-84907402
Coord C2 exon
chr11:84907506-84907635
Length
167 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTCTCCTACCCCCAGAGC
3' ss Score
9.31
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
Seq A exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAACCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAGCCACTCCCAGTGACCCGGCTAAGAACACACAAATCCCACTGTACTGTGGCAGGACAAAGATCTTCATGACTGACTCCATG
Seq C2 exon
CTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTGGAGCAGTGTGCCCGTTGCATCCAGTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAACAGAGGCGGGCTGCCGTGCTCATCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'39-38,'39-36,41-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.3=77.8)
A:
NO
C2:
PF0061222=IQ=PU(42.9=20.5)
Main Skipping Isoform:
ENSMUST00000093969fB2607
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCAGAACTTCAT
R:
CAGCCTGGATGAGCACGG
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types