BtaEX6085198 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17784516-17787017:+
Coord C1 exon
chr19:17784516-17784719
Coord A exon
chr19:17786669-17786814
Coord C2 exon
chr19:17786903-17787017
Length
146 bp
Sequences
Splice sites
3' ss Seq
CGAGGTCATTTTCATCACAGGCC
3' ss Score
5.38
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGGAATTTAAAGTTTGTAGTGGATGGTGATACTACTCTGATTGAGGACGGCAAGCTTGTATCTATCATCGCGGAATTGCTGTCCACCAAGACGGACATGGTGGAGAAAGCCCTCCTCTACCGGACGGTGGCTACGGGCCGTGACGTCATTGACAAGCAGCACACAGAGCAGGAAGCCAGCTACGGAAGGGATGCCTTCGCCAAG
Seq A exon
GCCATATACGAGCGCCTTTTCTGTTGGATTGTCTCCCGCATCAATGATATTATTGCGGTCAAGAACTCAGACACCACCATCCATGGCAAGAACACTGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTCGACAACAACAG
Seq C2 exon
CTTTGAGCAATTCTGCATCAATTACTGCAACGAGAAGCTCCAGCAGCTGTTTATTCAGCTGGTCCTGAAGCAAGAACAGGAGGAGTACCAGCGGGAAGGGATCCCCTGGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTGAGGACGGCAAGCTT
R:
TGTTCTTGCTTCAGGACCAGC
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]