RnoEX6048829 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68047918-68049538:-
Coord C1 exon
chr10:68049335-68049538
Coord A exon
chr10:68048109-68048254
Coord C2 exon
chr10:68047918-68048032
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGATGATCTTTCTGTCACAGGCA
3' ss Score
8.89
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAAATTTAAAATTTATAGTAGATGGTGACACGCCACTTATTGAGAATGGCAAAGTTGTATCTGTCATAGCAGAATTGCTCTCAACCAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATTGACAAACAGCACACGGAACAGGAGGCTAGCTACGGCAGAGACGCCTTTGCCAAG
Seq A exon
GCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTACGACACCACAGTACATGGGAAAAACACAGTTATTGGCGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
Seq C2 exon
CTTCGAGCAGTTCTGCATTAACTACTGCAATGAGAAGCTGCAGCAGCTGTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAAGGAATCCCCTGGAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'19-20,'19-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
ENSRNOT00000004609fB9238
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCTCAACCAAGGCAGAC
R:
GTGTTTCCAGGGGATTCCTTCC
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]