HsaEX6021999 @ hg19
Exon Skipping
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:7598]
Coordinates
chr17:31087308-31092099:-
Coord C1 exon
chr17:31091896-31092099
Coord A exon
chr17:31087500-31087645
Coord C2 exon
chr17:31087308-31087422
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGATGCTATTTTCCTTGCAGGCA
3' ss Score
10.44
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAAATTTAAAATTTGTAGTAGATGGTGACACGCCTCTTATTGAGAATGGCAAAGTAGTATCTATCATAGCAGAATTGCTCTCTACTAAGACAGATATGGTTGAGAAAGCCCTTCTTTACCGGACTGTGGCCACAGGCCGTGACATCATTGACAAGCAGCACACAGAACAAGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAG
Seq A exon
GCAATATATGAGCGCCTTTTTTGTTGGATCGTTACTCGCATCAATGATATTATTGAGGTCAAGAACTATGACACCACAATCCATGGGAAAAACACTGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
Seq C2 exon
TTTTGAACAATTCTGTATCAATTACTGCAATGAGAAACTGCAGCAGCTATTTATTCAGCTGGTTCTGAAGCAAGAACAAGAGGAATACCAGCGGGAAGGGATCCCCTGGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(11.3=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACACGCCTCTTATTGA
R:
TCTTGCTTCAGAACCAGCTGA
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)