BtaEX6086803 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28097747-28099521:+
Coord C1 exon
chr19:28097747-28097945
Coord A exon
chr19:28098098-28098322
Coord C2 exon
chr19:28099417-28099521
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCTATACCTTTCCCACCAGACC
3' ss Score
8.7
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
CTCCCCCTTCTATAAGATCGTGGTGCCCACCGTCGACACTGTCCGCTACAACTACCTGGTGAGCACCATGGTGGCCAGCCAGAACCCCGTCCTGCTGGTGGGTCCTGTGGGGACTGGAAAGACCTCCATTGCCCAGAGTGTCCTGCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCACAGTCAACATGTCTGCGCAG
Seq A exon
ACCACGTCTAATAATGTGCAGAGCATCATTGAGAGCAGGGTGGAGAAGCGAACCAAGGGTGTCTATGTGCCTTTCGGAGGCAAAAGCATGATCACCTTCATGGATGACCTCAATATGCCAGCCAAGGACACGTTTGGGTCCCAGCCCCCGCTGGAGCTGATTCGCCTCTGGATTGACTATGGCTTCTGGTATGATCGAACGAAGCAGACCATCAAGTACATTCGA
Seq C2 exon
GACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACCGTCATCTCCCCAAGGCTGCAGAGTCGATTTAATATCATCAACATGACCTTCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'48-49,'48-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
PF127752=AAA_7=FE(27.3=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTATAAGATCGTGGTGCCC
R:
CGTGGGGAAGGTCATGTTGAT
Band lengths:
299-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]