MmuEX6086671 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69270843-69272060:-
Coord C1 exon
chr11:69271862-69272060
Coord A exon
chr11:69271488-69271712
Coord C2 exon
chr11:69270843-69270947
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTGCTTTCCCACCAGACC
3' ss Score
9.69
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACTGTGCGGTATAACTACTTAGTGAGCACCCTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCCTCCAGCCAGTGGTCAGTGCTCGTCGTCAACATGTCCGCACAG
Seq A exon
ACCACGTCAAACAATGTGCAGAGCATCATTGAGAGCAGAGTAGAGAAGCGGACCAAGGGTGTGTATGTGCCATTCGGGGGCAAAAGCATGATTACTTTTATGGATGACCTAAACATGCCTGCCAAGGACATGTTTGGGTCCCAGCCGCCCCTGGAGCTGATTCGCCTCTGGATTGACTACGGCTTCTGGTACGATCGTGTGAAGCAGAGCATCAAGCACATCCGA
Seq C2 exon
GACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACTGTTATCTCCCCAAGGCTGCAGAGTCGCTTCAACATTATCAACATGACCTTCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'59-54,'59-53,60-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
PF127752=AAA_7=FE(27.3=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCCTTTCTATAAGATCATGGT
R:
CGTGGGGAAGGTCATGTTGAT
Band lengths:
304-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: