RnoEX6048029 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56066709-56068205:-
Coord C1 exon
chr10:56068007-56068205
Coord A exon
chr10:56067652-56067876
Coord C2 exon
chr10:56066709-56066813
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTGCTTTCCTATCAGACC
3' ss Score
8.78
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
CGCCCCTTTCTATAAGATCATGGTACCTACTGTTGATACCGTCCGATATAACTACCTCGTGAGCACCTTGGTGGCCAACCAGAATCCTGTCTTACTGGTGGGTCCTGTGGGAACTGGAAAGACCTCCATAGCCCAGAGTGTTCTCCAGTCCTTGCCTTCCAGCCAGTGGTCAGTGCTTGTTGTCAACATGTCTGCACAG
Seq A exon
ACCACATCGAACAACGTGCAGAGCATCATTGAGAGCAGAGTGGAGAAGCGAACCAAGGGTGTGTATGTGCCATTTGGGGGCAAAAGCATGATCACCTTTATGGATGACCTAAACATGCCTGCTAAGGATATGTTTGGGTCCCAGCCACCCCTGGAGCTGATACGCCTCTGGATTGACTATGGCTTCTGGTATGATCGTGTGAAGCAGACCATCAAGCACATTCGA
Seq C2 exon
GACATGTTCCTGATGGCTGCCATGGGGCCTCCAGGGGGTGGACGGACTGTTATCTCCCCGAGGCTGCAGAGTCGCTTCAACATCATCAACATGACCTTCCCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'64-64,'64-63,65-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(24.4=100)
A:
PF127752=AAA_7=FE(27.3=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCCTTTCTATAAGATCATGGT
R:
AGTGGGGAAGGTCATGTTGATG
Band lengths:
304-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]