BtaEX6087153 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29958374-29960836:-
Coord C1 exon
chr19:29960666-29960836
Coord A exon
chr19:29958567-29958671
Coord C2 exon
chr19:29958374-29958469
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCTTCTGGGTGCAGGTA
3' ss Score
8.87
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGATGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGATGAGGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCACAAGCTGGAGAATCGG
Seq A exon
GTACGGGAGTTAGAAAGCGAGCTGGATGCTGAGCAGAAGAGGGGGGCTGAGGCTCTGAAGGGCGCCCACAGATATGAGCGAAAGGTCAAGGAGATGACTTACCAG
Seq C2 exon
GCAGAGGAGGACCGCAAGAATATCCTCAGGCTCCAAGACTTGGTGGACAAGCTGCAGGCCAAAGTGAAGGCTTACAAGAGGCAGGCAGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'34-35,'34-34,35-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.943 C2=0.281
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0026115=Tropomyosin=PU(26.6=71.9)
A:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0026115=Tropomyosin=FE(22.1=100)
C2:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0026115=Tropomyosin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAGAAGGAGCAGGACA
R:
CTCTGCCTGCCTCTTGTAAGC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]