GgaEX7009410 @ galGal4
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:298077-300105:-
Coord C1 exon
chr18:299935-300105
Coord A exon
chr18:298255-298359
Coord C2 exon
chr18:298077-298172
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCATGGTATTGTGTTTCAGATT
3' ss Score
9.07
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCAGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACTTGGAGAGGATGAAGAGGAATCTGGAACAAATGGTGAAGGACCTGCAGCACCGTCTGGATGAAGCTGAGCAGCTGGCACTGAAGGGTGGAAAGAAGCAACTCCAGAAACTAGAGGCCAGG
Seq A exon
ATTCATGAGTTAGAAAATGAGCTTGACATTGAGCAGAAGCGAGGAACAGAGTCACTGAAAGGTGCTCGCAAGTATGAACGAAGGCTGAAGGAGCTCACTTACCAG
Seq C2 exon
TCTGAAGAGGATAAGAAAAATATTCTCCGGCTCCAGAACCTGGTGGACAAGCTGCAGCTAAAAGTGAAAGCATACAAGAAACAGGCTGAGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'36-37,'36-36,37-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGAGCAGGACACCA
R:
GCTTCCTCAGCCTGTTTCTTGT
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]