HsaEX6020991 @ hg38
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10303196-10306629:-
Coord C1 exon
chr17:10306459-10306629
Coord A exon
chr17:10303394-10303498
Coord C2 exon
chr17:10303196-10303291
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTCATCCTACTCAGGTG
3' ss Score
9.04
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTGCCATGATGGCTGAGGAGCTAAAGAAGGAACAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTAGATGAGGCTGAACAACTGGCGCTGAAGGGCGGGAAGAAGCAGATCCAGAAACTGGAGAACCGG
Seq A exon
GTGCGGGAGCTGGAAAATGAGCTTGATGTGGAACAGAAGAGGGGAGCTGAAGCCCTGAAGGGAGCCCACAAGTACGAACGCAAAGTCAAGGAGATGACTTACCAG
Seq C2 exon
GCTGAGGAGGACCACAAGAATATCCTTAGGCTCCAGGACCTGGTGGACAAGCTGCAGGCCAAAGTGAAGTCTTACAAGAGGCAGGCTGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.886 C2=0.406
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0157614=Myosin_tail_1=FE(4.0=100)
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAGGAGCTAAAGAAGGA
R:
TCCTCAGCCTGCCTCTTGTAA
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains