BtaEX6087156 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30053723-30054311:-
Coord C1 exon
chr19:30054213-30054311
Coord A exon
chr19:30054018-30054121
Coord C2 exon
chr19:30053723-30053861
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTGAACTCTGTGTCCCCAGAAA
3' ss Score
7.58
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
ATCTTCTAGAAAAGTCTAGAGTTACTTTCCAGTTGAAGGCAGAAAGAAGCTACCATATTTTTTATCAGATCACTTCCAATAAGAAGCCAGATCTGATTG
Seq A exon
AAATGCTCCTGATCACCACCAACCCATATGATTACGCCTTTGTCAGTCAAGGGGAGATCACAGTCCCTAGCATTGATGACCAAGAAGAGCTGATGGCCACTGAT
Seq C2 exon
AGCGCCATAGACATCCTGGGCTTTACTTCTGAGGAGAAAGTGTCCATCTACAAGCTCACGGGGGCAGTAATGCATTACGGGAACATGAAATTCAAGCAAAAGCAGCGTGAGGAGCAAGCAGAGCCAGATGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTAGAGTTACTTTCCAGTTGAA
R:
CCATCTGGCTCTGCTTGCTC
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]