DreEX6096655 @ danRer10
Exon Skipping
Gene
ENSDARG00000099959 | smyhc1
Description
slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
Coordinates
chr24:40963857-40964675:-
Coord C1 exon
chr24:40964577-40964675
Coord A exon
chr24:40964391-40964494
Coord C2 exon
chr24:40963857-40963995
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTACTGCCTGTTCTTTACAGAGA
3' ss Score
8
5' ss Seq
GACGTTAGT
5' ss Score
0.13
Exon sequences
Seq C1 exon
ACCTGCTTGAGAAGTCTCGTGTCACTTATCAGCTCAAAGCTGAGAGAGACTACCACATCTTCTACCAGATCCTGTCTCAGAAGAAACCGGAGCTACTGG
Seq A exon
AGATGTTGCTCATCACCAACAACCCCTATGATTACTCCTACATCTCCCAAGGAGAGACGCAAGTGGCATCGATTGATGATGCCGAAGAGTTGATTGCCACTGAC
Seq C2 exon
GATGCCTTTGATGTGCTGGGCTTCACACAAGATGAAAAATCAGGCATCTACAAGCTGACTGGTGCCATCATGCACTTTGGTAACATGAAGTTCAAGCAGAAGCAGAGAGAGGAACAGGCAGAGGCTGATGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099959-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTGAGAAGTCTCGTGT
R:
CTTCAGTGCCATCAGCCTCTG
Band lengths:
237-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]