MmuEX6086309 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67322991-67342550:+
Coord C1 exon
chr11:67322991-67323041
Coord A exon
chr11:67334899-67335002
Coord C2 exon
chr11:67342241-67342550
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTCTATCTTTTACAGACT
3' ss Score
7.62
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
AGGACACCCCGTTCCCGAAGGACACTGAGAGTCACGCTGAGAACAAAGAAG
Seq A exon
ACTTGCTTCTGATTTCAACCAACCCCTTCGACTTCCCTTTCGTGAGCCAAGGAGAGGTCACAGTAGCTAGCATCGATGACAGCGAGGAATTGTTGGCCACTGAT
Seq C2 exon
CCAATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCCACAGACACCTCCTTCAAGAACAAGTTGTATGACCAGCACCTGGGAAAGTCCAACAACTTCCAGAAGCCTAAACCCACCAAAGGCAAGGCCGAAGCCCACTTCTCCCTGGTGCACTATGCGGGCACTGTGGATTACAACATCGCTGGCTGGCTGGATAAGAACAAGGACCCACTGAATGAGACCGTGGTGGGGCTGTACCAGAAGTCCTCCCTGAAGTTGTTGTCCTTCCTCTTTTCCAACTACGCAGGAGCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'1-18,'1-12,11-18=AN
Average complexity
A_C3
Mappability confidence:
90%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACACTGAGAGTCACGCT
R:
GTTCTTATCCAGCCAGCCAGC
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types