DreEX6023472 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40755972-40756549:-
Coord C1 exon
chr6:40756451-40756549
Coord A exon
chr6:40756241-40756344
Coord C2 exon
chr6:40755972-40756110
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTATTCCTCTCGTAGAGG
3' ss Score
7.62
5' ss Seq
GATGTAGGT
5' ss Score
4.9
Exon sequences
Seq C1 exon
ATCTGCTGGAAAAGTCCAGGGTAACTTTCCAGTTGTCTGCTGAGAGGAGCTACCACATCTTCTACCAGCTGTGCACAGGCCATAAGCCAGAACTGCTGG
Seq A exon
AGGCTCTTCTGATCACCACTAACCCATACGACTATCCCATGATCAGTCAGGGTGAGATCACAGTCAAGAGCATCAACGATGTGGAAGAGTTCATTGCAACTGAT
Seq C2 exon
ACAGCCATTGATATTCTGGGCTTCAATGCTGAAGAGAAGGTAGGCATCTACAAGCTGACAGGAGCTGTGATGCATCATGGGAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGAACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCCAGGGTAACTTTCCAGT
R:
CTCAGTTCCATCAGGCTCAGC
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]