GgaEX6015710 @ galGal4
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:326565-327175:-
Coord C1 exon
chr18:327077-327175
Coord A exon
chr18:326881-326984
Coord C2 exon
chr18:326565-326703
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGTGCACTCTACGCTTGCAGATC
3' ss Score
6.86
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAATCCAGAGTGACTTTCCAGCTAGCCAGTGAAAGGAGCTATCATATTTTTTACCAGATCATGTCCAACAAGAAACCAGAGCTCATTG
Seq A exon
ATCTCCTTCTCATCTCGACCAACCCCTACGACTTCGCCTACGTGAGCCAAGGGGAAATTACCGTTGCCAGCATTGATGACAGCGAAGAGCTGTTGGCGACAGAC
Seq C2 exon
AACGCCGTGGATATCCTGGGCTTCAGCCCCGACGAGAAAGTGGGGATGTACAAGCTGACGGGGGCCGTCATGCACTACGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCGGACGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAATCCAGAGTGACTTTCC
R:
CTGCTCCTCCCGCTGCTT
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]