BtaEX6087130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29988989-29996066:-
Coord C1 exon
chr19:29995968-29996066
Coord A exon
chr19:29995760-29995863
Coord C2 exon
chr19:29988989-29989127
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGGATCTTCCTGCTCCACAGACC
3' ss Score
7.83
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTCTTAGAAAAATCCAGGGTGACATTTCAATTATCCAGTGAGAGAAGCTATCATATTTTTTACCAAATCATGTCCAACAAGAAGCCAGAACTCATCG
Seq A exon
ACCTGCTTCTCATTTCAACCAACCCCTTTGACTTCCCCTTCGTGAGCCAGGGAGAGGTCACCGTGGCCAGTATCGATGACAGTGAGGAGCTGTTGGCCACTGAT
Seq C2 exon
AATGCCATTGACATCCTGGGCTTCAGCTCAGAGGAGAAGGTCGGGATCTACAAGCTGACGGGCGCTGTGATGCACTACGGGAACATGAAGTTCAAGCAGAAGCAGCGAGAGGAGCAGGCAGAGCCGGACGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'7-8,'7-7,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTAGAAAAATCCAGGGTGACA
R:
GGCTCTGCCTGCTCCTCT
Band lengths:
223-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]