MmuEX6086309 @ mm9
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67148205-67151281:+
Coord C1 exon
chr11:67148205-67148303
Coord A exon
chr11:67148401-67148504
Coord C2 exon
chr11:67151143-67151281
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTCTATCTTTTACAGACT
3' ss Score
7.62
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
ATCTCCTGGAAAAATCCAGAGTGACATTCCAGTTATCCAGTGAAAGAAGCTATCACATTTTTTATCAAATCATGTCAAATAAGAAGCCAGAACTAATTG
Seq A exon
ACTTGCTTCTGATTTCAACCAACCCCTTCGACTTCCCTTTCGTGAGCCAAGGAGAGGTCACAGTAGCTAGCATCGATGACAGCGAGGAATTGTTGGCCACTGAT
Seq C2 exon
AATGCCATTGACATCCTGGGCTTTAGCCCGGAGGAGAAAGTTGGGATCTACAAGCTGACAGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAACAGAAGCAGAGAGAGGAGCAGGCTGAGCCAGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAATCCAGAGTGACATTCCA
R:
GGCTCAGCCTGCTCCTCT
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: