GgaEX0020506 @ galGal3
Exon Skipping
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:9242-10066:+
Coord C1 exon
chr19:9242-9340
Coord A exon
chr19:9454-9557
Coord C2 exon
chr19:9928-10066
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCACCACTGAGCAGAGA
3' ss Score
2.08
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
ACCTCCTGGAGAAGTCCCGAGTCATCTTCCAGCTGAAGGCTGAGCGGAACTACCACATCTTCTACCAGATCCTCTCCAACAAGAAGCCTGAGCTTCTGG
Seq A exon
AGATGCTGCTCATCACCAACAACCCTTATGACTACAGTTACGTCTCCCAAGGAGAGGTGACCGTGGCCTCCATTGATGACTCGGAAGAGCTGTTGGCAACCGAT
Seq C2 exon
AGTGCTTTCGATGTCCTGGGCTTCACTGCTGAGGAGAAGGCTGGTGTCTACAAGCTGACGGGTGCCATCATGCACTTTGGCAATATGAAGTTCAAGCAGAAGCAACGGGAGGAGCAGGCGGAGCCAGACGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTGGAGAAGTCCCGAG
R:
CTCCCGTTGCTTCTGCTTGAA
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]