MmuEX6041395 @ mm10
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54960945-54961827:-
Coord C1 exon
chr14:54961729-54961827
Coord A exon
chr14:54961167-54961220
Coord C2 exon
chr14:54960945-54961083
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTACGCCTTCGTCTCTCAGGGA
3' ss Score
8.92
5' ss Seq
GATGTACGT
5' ss Score
6.45
Exon sequences
Seq C1 exon
ACCTTCTGGAGAAGTCCCGGGTGATCTTCCAGCTAAAGGCTGAGAGGAACTACCACATCTTCTACCAGATCCTGTCCAACAAGAAGCCGGAGCTGCTGG
Seq A exon
GGAGAGGTGTCCGTGGCCTCCATTGATGACTCTGAGGAGCTCTTGGCCACTGAT
Seq C2 exon
AGTGCCTTTGATGTGCTGAGCTTCACGGCAGAGGAGAAGGCTGGTGTCTACAAGCTGACAGGGGCCATCATGCACTACGGAAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCTGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'17-20,'17-19,18-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCCCGGGTGATCTTCC
R:
TCAGCTTGTAGACACCAGCCT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types