RnoEX6051666 @ rn6
Exon Skipping
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33624707-33625541:-
Coord C1 exon
chr15:33625443-33625541
Coord A exon
chr15:33624929-33625032
Coord C2 exon
chr15:33624707-33624845
Length
104 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCATGCTTGACACAGACA
3' ss Score
5.03
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACCTTCTGGAGAAGTCCCGGGTGATCTTCCAGCTAAAGGCTGAGAGGAACTACCATATCTTCTACCAGATCCTGTCCAACAAGAAGCCGGAGCTGCTGG
Seq A exon
ACATGCTGCTGGTTACCAACAACCCGTACGACTATGCCTTCGTCTCTCAGGGAGAGGTGTCTGTGGCCTCCATTGATGACTCCGAGGAGCTTTTGGCCACTGAT
Seq C2 exon
AGCGCCTTTGATGTGCTGGGCTTCACAGCAGAGGAGAAGGCCGGTGTCTACAAGCTGACAGGCGCCATCATGCACTATGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCAGACGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757-'14-17,'14-15,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGAGAAGTCCCGGGT
R:
GCTCCTCCCGCTGCTTCT
Band lengths:
212-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]