HsaEX6070611 @ hg19
Exon Skipping
Gene
ENSG00000197616 | MYH6
Description
myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:7576]
Coordinates
chr14:23871673-23872655:-
Coord C1 exon
chr14:23872557-23872655
Coord A exon
chr14:23871906-23872009
Coord C2 exon
chr14:23871673-23871811
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTTGCCTGGTGCAGACA
3' ss Score
7.23
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ACCTGCTGGAGAAGTCCCGGGTGATCTTCCAGCTGAAAGCTGAGAGAAACTACCACATCTTCTACCAGATTCTGTCCAACAAGAAGCCGGAGTTGCTGG
Seq A exon
ACATGCTGCTGGTCACCAACAATCCCTACGACTACGCCTTCGTGTCTCAGGGAGAGGTGTCCGTGGCCTCCATTGATGACTCCGAGGAGCTCATGGCCACCGAT
Seq C2 exon
AGTGCCTTTGACGTGCTGGGCTTCACTTCAGAGGAGAAAGCTGGCGTCTACAAGCTGACGGGAGCCATCATGCACTACGGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCAGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTGGAGAAGTCCCG
R:
CTCCCGCTGCTTCTGCTTG
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)