MmuEX6041395 @ mm9
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55579782-55580664:-
Coord C1 exon
chr14:55580566-55580664
Coord A exon
chr14:55580004-55580107
Coord C2 exon
chr14:55579782-55579920
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCTGCTTGAAACAGACA
3' ss Score
6.45
5' ss Seq
GATGTACGT
5' ss Score
6.45
Exon sequences
Seq C1 exon
ACCTTCTGGAGAAGTCCCGGGTGATCTTCCAGCTAAAGGCTGAGAGGAACTACCACATCTTCTACCAGATCCTGTCCAACAAGAAGCCGGAGCTGCTGG
Seq A exon
ACATGCTGCTGGTCACCAACAACCCATACGACTACGCCTTCGTCTCTCAGGGAGAGGTGTCCGTGGCCTCCATTGATGACTCTGAGGAGCTCTTGGCCACTGAT
Seq C2 exon
AGTGCCTTTGATGTGCTGAGCTTCACGGCAGAGGAGAAGGCTGGTGTCTACAAGCTGACAGGGGCCATCATGCACTACGGAAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGGCGGAGCCTGATGGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGAGAAGTCCCGGGT
R:
GCTCCTCCCGCTGCTTCT
Band lengths:
212-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: