BtaEX6087169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30039187-30040317:-
Coord C1 exon
chr19:30040191-30040317
Coord A exon
chr19:30039508-30039626
Coord C2 exon
chr19:30039187-30039383
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTACTTCTATAATTCTTAGGTG
3' ss Score
8.46
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGAAACCTTGAAAAGATGTGCCGCACTCTAGAAGATCAAGTGAGTGAACTTAAGACAAAAGAGGAGGAGCAGCAGCGGCTGATCAACGACCTGACAGCTCAGAGAGCGCGTCTGCAGACGGAAGCCG
Seq A exon
GTGAATATTCCCGACAACTGGATGAGAAAGATGCTTTGGTCTCTCAGCTTTCAAGGACCAAGCAAGCATCTACTCAGCAGATTGAGGAACTGAAACGTCAGCTAGAGGAAGAAACTAAA
Seq C2 exon
GCCAAGAACGCCCTGGCCCACGCCCTGCAGTCCTCCCGGCACGACTGTGACCTGCTGCGCGAACAGTACGAGGAGGAGCAGGAGGGCAAGGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.925 C2=0.591
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100)
A:
PF0003816=Filament=PD(4.2=30.0),PF0157614=Myosin_tail_1=FE(4.5=100)
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAAGAGGAGGAGCAGCA
R:
GATGGCGTCCGTCTCGTACTT
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]