RnoEX6047774 @ rn6
Exon Skipping
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53839612-53917474:+
Coord C1 exon
chr10:53839612-53839738
Coord A exon
chr10:53840067-53840185
Coord C2 exon
chr10:53917278-53917474
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTCTGCTGTCCTTAGGAG
3' ss Score
10.59
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAACCTTGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGCGAGCTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAATGAGCTGACTGCACAGAGAGCACGCCTGCAGACAGAAGCAG
Seq A exon
GAGAGTATTCCCGACAGCTGGATGAGAAAGATGCTTTAGTCTCTCAGTTGTCAAGGAGCAAACAGGCATCCACCCAGCAGATTGAGGAGCTGAAGCGACAGCTCGAGGAAGAAACCAAG
Seq C2 exon
GCCAAGAATGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCACGACTGTGACCTGCTTCGGGAACAGTACGAGGAGGAGCAGGAAGGCAAAGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042-'32-40,'32-35,33-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.925 C2=0.758
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.9=100)
A:
PF0157614=Myosin_tail_1=FE(10.1=100)
C2:
PF0157614=Myosin_tail_1=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGAAGATGTGCCGCACT
R:
CTCGCTGTTGGCCTTGGAC
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]