RnoEX6047775 @ rn6
Exon Skipping
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53838746-53840185:+
Coord C1 exon
chr10:53838746-53839135
Coord A exon
chr10:53839612-53839738
Coord C2 exon
chr10:53840067-53840185
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTTACCGTGTGATCCTTAGGGA
3' ss Score
8.51
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGGGCCACATCTGCTCAGGTGGAGTTGAATAAGAAGCGGGAAACGGAGTTCCAGAAGCTTCGCAGGGACCTGGAGGAGGCCACCCTGCAGCATGAAGCCACATCAGCCGCTCTTCGGAAGAAGCACGCGGACAGTATGGCGGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGACGACCTTAGCAGTAATGCAGAGGCCATCGCCAAAGCCAAG
Seq A exon
GGAAACCTTGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGCGAGCTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAATGAGCTGACTGCACAGAGAGCACGCCTGCAGACAGAAGCAG
Seq C2 exon
GAGAGTATTCCCGACAGCTGGATGAGAAAGATGCTTTAGTCTCTCAGTTGTCAAGGAGCAAACAGGCATCCACCCAGCAGATTGAGGAGCTGAAGCGACAGCTCGAGGAAGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.837 C2=0.925
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(14.9=13.1),PF0157614=Myosin_tail_1=FE(33.5=100),PF079267=TPR_MLP1_2=PD(97.6=95.4)
A:
PF0157614=Myosin_tail_1=FE(10.9=100)
C2:
PF0157614=Myosin_tail_1=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCAGAAGCTTCGCAGG
R:
TCTCATCCAGCTGTCGGGAAT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]