BtaEX6087203 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30245536-30247138:-
Coord C1 exon
chr19:30246982-30247138
Coord A exon
chr19:30245973-30246000
Coord C2 exon
chr19:30245536-30245644
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTCCCTTTGGCAGATC
3' ss Score
10.2
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACCTACTCGGGCCTCTTCTGCGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCCGAGGTGGTGGAGGGCTACCGGGGCAAGAAGCGCCAGGAGGCCCCGCCCCACATCTTTTCCATCTCTGACAACGCCTATCAGTTCATGCTCACAG
Seq A exon
ATCGTGAAAACCAGTCTATTCTGATCAC
Seq C2 exon
TGGAGAATCCGGGGCAGGAAAGACTGTGAACACCAAAAGGGTCATCCAGTACTTTGCAACAATTGCAGCAACTGGAGACCTTGCCAAGAAGAAGGACTCCAAGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(1.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCATCTCTGACAACGCCT
R:
CAAGGTCTCCAGTTGCTGCAA
Band lengths:
122-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]